All Publication List (since 1990)

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    2020


  1. Masuda K, Renard-Guillet C, Shirahige K,Sutani T.

        Bioinformatical dissection of fission yeast DNA replication origins.
        Open Biol.2020 Jul;10(7):200052. doi: 10.1098/rsob.200052. Epub 2020 Jul 22. [PubMed]

  2. Tanaka S, Ise W, Inoue T, Ito A, Ono C, Shima Y, Sakakibara S, Nakayama M, Fujii K, Miura I, Sharif J, Koseki H, Koni PA, Raman I, Li QZ, Kubo M, Fujiki K, Nakato R, Shirahige K,Araki H, Miura F, Ito T, Kawakami E, Baba Y, Kurosaki T.

        Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity.
        Nat Immunol.2020 Aug;21(8):950-961. doi: 10.1038/s41590-020-0700-y. Epub 2020 Jun 22. [PubMed]

  3. Seong KH, Ly NH, Katou Y, Yokota N, Nakato R, Murakami S, Hirayama A, Fukuda S, Kang S, Soga T, Shirahige K,Ishii S.

        Publisher Correction: Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells.
        Commun Biol.2020 May 18;3(1):251. doi: 10.1038/s42003-020-0992-3. [PubMed]

  4. Seong KH, Ly NH, Katou Y, Yokota N, Nakato R, Murakami S, Hirayama A, Fukuda S, Kang S, Soga T, Shirahige K,Ishii S.

        Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells.
        Commun Biol.2020 May 4;3(1):208. doi: 10.1038/s42003-020-0935-z. [PubMed]

  5. Ochi Y, Kon A, Sakata T, Nakagawa MM, Nakazawa N, Kakuta M, Kataoka K, Koseki H, Nakayama M, Morishita D, Tsuruyama T, Saiki R, Yoda A, Okuda R, Yoshizato T, Yoshida K, Shiozawa Y, Nannya Y, Kotani S, Kogure Y, Kakiuchi N, Nishimura T, Makishima H, Malcovati L, Yokoyama A, Takeuchi K, Sugihara E, Sato TA, Sanada M, Takaori-Kondo A, Cazzola M, Kengaku M, Miyano S, Shirahige K,Suzuki HI, Ogawa S.

        Combined Cohesin-RUNX1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes.
        Cancer Discov.2020 Jun;10(6):836-853. doi: 10.1158/2159-8290.CD-19-0982. Epub 2020 Apr 5. [PubMed]

  6. Reichmann J, Dobie K, Lister LM, Crichton JH, Best D, MacLennan M, Read D, Raymond ES, Hung CC, Boyle S, Shirahige K,Cooke HJ, Herbert M, Adams IR.

        Tex19.1 inhibits the N-end rule pathway and maintains acetylated SMC3 cohesin and sister chromatid cohesion in oocytes.
        J Cell Biol.2020 May 4;219(5):e201702123. doi: 10.1083/jcb.201702123. [PubMed]

  7. Yoshida K, Maekawa T, Ly NH, Fujita SI, Muratani M, Ando M, Katou Y, Araki H, Miura F, Shirahige K,Okada M, Ito T, Chatton B, Ishii S.

        ATF7-Dependent Epigenetic Changes Are Required for the Intergenerational Effect of a Paternal Low-Protein Diet.
        Mol Cell.2020 May 7;78(3):445-458.e6. doi: 10.1016/j.molcel.2020.02.028. Epub 2020 Mar 19. [PubMed]

  8. Suzuki T, Sutani T, Nakai H, Shirahige K,Kinoshita S.

        The Microbiome of the Meibum and Ocular Surface in Healthy Subjects.
        Invest Ophthalmol Vis Sci. 2020 Feb 7;61(2):18. doi: 10.1167/iovs.61.2.18. [PubMed]

  9. Ruggiero A, Katou Y, Shirahige K,Séveno M, Piatti S.

        The Phosphatase PP1 Promotes Mitotic Slippage through Mad3 Dephosphorylation.
        Curr Biol. 2020 Jan 20;30(2):335-343.e5. doi: 10.1016/j.cub.2019.11.054. Epub 2020 Jan 9. [PubMed]

    10. ↑Back to menu

    2019


  10. Nakato R, Wada Y, Nakaki R, Nagae G, Katou Y, Tsutsumi S, Nakajima N, Fukuhara H, Iguchi A, Kohro T, Kanki Y, Saito Y, Kobayashi M, Izumi-Taguchi A, Osato N, Tatsuno K, Kamio A, Hayashi-Takanaka Y, Wada H, Ohta S, Aikawa M, Nakajima H, Nakamura M, McGee RC, Heppner KW, Kawakatsu T, Genno M, Yanase H, Kume H, Senbonmatsu T, Homma Y, Nishimura S, Mitsuyama T, Aburatani H, Kimura H, Shirahige K

        Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells.
        Epigenetics Chromatin. 2019 Dec 19;12(1):77. doi: 10.1186/s13072-019-0319-0. [PubMed]

  11. Ding DQ, Okamasa K, Katou Y, Oya E, Nakayama JI, Chikashige Y, Shirahige K, Haraguchi T, Hiraoka Y.

        Chromosome-associated RNA-protein complexes promote pairing of homologous chromosomes during meiosis in Schizosaccharomyces pombe.
        Nat Commun. 2019 Dec 6;10(1):5598. doi: 10.1038/s41467-019-13609-0. [PubMed]

  12. Fiordaliso SK, Iwata-Otsubo A, Ritter AL, Quesnel-Vallières M, Fujiki K, Nishi E, Hancarova M, Miyake N, Morton JEV, Lee S, Hackmann K, Bando M, Masuda K, Nakato R, Arakawa M, Bhoj E, Li D, Hakonarson H, Takeda R, Harr M, Keena B, Zackai EH, Okamoto N, Mizuno S, Ko JM, Valachova A, Prchalova D, Vlckova M, Pippucci T, Seiler C, Choi M, Matsumoto N, Di Donato N, Barash Y, Sedlacek Z, Shirahige K,Izumi K.

        Missense Mutations in NKAP Cause a Disorder of Transcriptional Regulation Characterized by Marfanoid Habitus and Cognitive Impairment.
        Am J Hum Genet.2019 Nov 7;105(5):987-995. doi: 10.1016/j.ajhg.2019.09.009. Epub 2019 Oct 3. [PubMed]

  13. Yamashita S, Kataoka K, Yamamoto H, Kato T, Hara S, Yamaguchi K, Renard-Guillet C, Katou Y, Shirahige K,Ochi H, Ogino H, Uchida T, Inui M, Takada S, Shigenobu S, Asahara H.

        Comparative analysis demonstrates cell type-specific conservation of SOX9 targets between mouse and chicken.
        Sci Rep. 2019 Aug 29;9(1):12560. doi: 10.1038/s41598-019-48979-4. [PubMed]

  14. Kanatsu-Shinohara M, Yamamoto T, Toh H, Kazuki Y, Kazuki K, Imoto J, Ikeo K, Oshima M, Shirahige K,Iwama A, Nabeshima Y, Sasaki H, Shinohara T.

        Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation.
        Proc Natl Acad Sci U S A. 2019 Aug 13;116(33):16404-16409. doi: 10.1073/pnas.1904980116. Epub 2019 Jul 29. [PubMed]

  15. Kawasaki Y, Miyamoto M, Oda T, Matsumura K, Negishi L, Nakato R, Suda S, Yokota N, Shirahige K,Akiyama T.

        The novel lncRNA CALIC upregulates AXL to promote colon cancer metastasis.
        EMBO Rep. 2019 Aug;20(8):e47052. doi: 10.15252/embr.201847052. Epub 2019 Jul 29. [PubMed]

  16. Hiraga SI, Monerawela C, Katou Y, Shaw S, Clark KR, Shirahige K,Donaldson AD.

        Budding yeast Rif1 binds to replication origins and protects DNA at blocked replication forks.
        EMBO Rep. 2019 Jul;20(7):e48152. doi: 10.15252/embr.201948152. Epub 2019 Jun 26. No abstract available. [PubMed]

  17. Makino Y, Jensen NH, Yokota N, Rossner MJ, Akiyama H, Shirahige K,Okada Y.

        Single cell RNA-sequencing identified Dec2 as a suppressive factor for spermatogonial differentiation by inhibiting Sohlh1 expression.
        Sci Rep. 2019 Apr 15;9(1):6063. doi: 10.1038/s41598-019-42578-z. [PubMed]

  18. Kline AD, Krantz ID, Bando M, Shirahige K,Chea S, Sakata T, Rao S, Dorsett D, Singh VP, Gerton JL, Horsfield JA, Calof AL, Katz O, Grados M, Raible S, Barañano K, Lyon G, Musio A, Carrico CS, Clemens DK, Caudill P, Massa V, McGill BE, Dommestrup A, O'Connor J, Haaland RE.

        Cornelia de Lange syndrome, related disorders, and the Cohesin complex: Abstracts from the 8th biennial scientific and educational symposium 2018.
        Am J Med Genet A.2019 Jun;179(6):1080-1090. doi: 10.1002/ajmg.a.61108. Epub 2019 Mar 15. [PubMed]

  19. Ueda S, Cordeiro IR, Moriyama Y, Nishimori C, Kai KI, Yu R, Nakato R, Shirahige K,Tanaka M.

        Cux2 refines the forelimb field by controlling expression of Raldh2 and Hox genes.
        Biol Open. 2019 Feb 1;8(2). pii: bio040584. doi: 10.1242/bio.040584. [PubMed]

  20. Matsuda T, Irie T, Katsurabayashi S, Hayashi Y, Nagai T, Hamazaki N, Adefuin AMD, Miura F, Ito T, Kimura H, Shirahige K,Takeda T, Iwasaki K, Imamura T, Nakashima K.

        Pioneer Factor NeuroD1 Rearranges Transcriptional and Epigenetic Profiles to Execute Microglia-Neuron Conversion.
        Neuron.2019 Feb 6;101(3):472-485.e7. doi: 10.1016/j.neuron.2018.12.010. Epub 2019 Jan 9. [PubMed]

  21. Harada A, Maehara K, Handa T, Arimura Y, Nogami J, Hayashi-Takanaka Y, Shirahige K,Kurumizaka H, Kimura H, Ohkawa Y.

        A chromatin integration labelling method enables epigenomic profiling with lower input.
        Nat Cell Biol.2019 Feb;21(2):287-296. doi: 10.1038/s41556-018-0248-3. Epub 2018 Dec 10. [PubMed]

    22. ↑Back to menu

    2018


  22. Gali VK, Dickerson D, Katou Y, Fujiki K, Shirahige K,Owen-Hughes T, Kubota T, Donaldson AD.

        Identification of Elg1 interaction partners and effects on post-replication chromatin re-formation.
        PLoS Genet. 2018 Nov 12;14(11):e1007783. doi: 10.1371/journal.pgen.1007783. eCollection 2018 Nov. [PubMed]

  23. Miyoshi M, Sato M, Saito K, Otani L, Shirahige K,Miura F, Ito T, Jia H, Kato H.

        Maternal Protein Restriction Alters the Renal Ptger1 DNA Methylation State in SHRSP Offspring.
        Nutrients. 2018 Oct 5;10(10). pii: E1436. doi: 10.3390/nu10101436. [PubMed]

  24. Yoshida K, Muratani M, Araki H, Miura F, Suzuki T, Dohmae N, Katou Y, Shirahige K,Ito T, Ishii S.

        Mapping of histone-binding sites in histone replacement-completed spermatozoa.
        Nat Commun. 2018 Sep 24;9(1):3885. doi: 10.1038/s41467-018-06243-9. [PubMed]

  25. Hiraga SI, Monerawela C, Katou Y, Shaw S, Clark KR, Shirahige K, Donaldson AD.

        Budding yeast Rif1 binds to replication origins and protects DNA at blocked replication forks.
        EMBO Rep.2018 Sep;19(9). pii: e46222. doi: 10.15252/embr.201846222. Epub 2018 Aug 13. [PubMed]

  26. Minamino M, Tei S, Negishi L, Kanemaki MT, Yoshimura A, Sutani T, Bando M, Shirahige K

        Temporal Regulation of ESCO2 Degradation by the MCM Complex, the CUL4-DDB1-VPRBP Complex, and the Anaphase-Promoting Complex.
        Curr Biol.2018 Aug 20;28(16):2665-2672.e5. doi: 10.1016/j.cub.2018.06.037. Epub 2018 Aug 9. [PubMed]

  27. Yamaguchi K, Hada M, Fukuda Y, Inoue E, Makino Y, Katou Y, Shirahige K,Okada Y.

        Re-evaluating the Localization of Sperm-Retained Histones Revealed the Modification-Dependent Accumulation in Specific Genome Regions.
        Cell Rep.2018 Jun 26;23(13):3920-3932. doi: 10.1016/j.celrep.2018.05.094. [PubMed]

  28. Morikawa A, Hayashi T, Kobayashi M, Kato Y, Shirahige K, Itoh T, Urashima M, Okamoto A, Akiyama T.

        Somatic copy number alterations have prognostic impact in patients with ovarian clear cell carcinoma.
        Oncol Rep.2018 Jul;40(1):309-318. doi: 10.3892/or.2018.6419. Epub 2018 May 8. [PubMed]

  29. Nakato R, Shirahige K

        Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile.
        Bioinformatics.2018 Jul 15;34(14):2356-2363. doi: 10.1093/bioinformatics/bty137. [PubMed]

  30. Kuroki S, Nakai Y, Maeda R, Okashita N, Akiyoshi M, Yamaguchi Y, Kitano S, Miyachi H, Nakato R, Ichiyanagi K, Shirahige K,Kimura H, Shinkai Y, Tachibana M.

        Combined Loss of JMJD1A and JMJD1B Reveals Critical Roles for H3K9 Demethylation in the Maintenance of Embryonic Stem Cells and Early Embryogenesis.
        Stem Cell Reports.2018 Apr 10;10(4):1340-1354. doi: 10.1016/j.stemcr.2018.02.002. Epub 2018 Mar 8. [PubMed]

  31. Ogura Y, Gotoh Y, Itoh T, Sato MP, Seto K, Yoshino S, Isobe J, Etoh Y, Kurogi M, Kimata K, Maeda E, Piérard D, Kusumoto M, Akiba M, Tominaga K, Kirino Y, Kato Y, Shirahige K,Ooka T, Ishijima N, Lee KI, Iyoda S, Mainil JG, Hayashi T.

        Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages.
        Microb Genom.Reports.2017 Nov;3(11). doi: 10.1099/mgen.0.000141. [PubMed]

  32. Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, Okamoto R, Yoshimura M, DeRango-Adem E, van Leeuwen J, Shirahige K,Baryshnikova A, Brown GW, Hirano H, Costanzo M, Andrews B, Ohya Y, Osada H, Yoshida M, Myers CL, Boone C.

        Errata: Functional annotation of chemical libraries across diverse biological processes.
        Nat Commun.2017 Nov 21;13(12):1286. doi: 10.1038/nchembio1217-1286b. [PubMed]

  33. Fujimoto M, Takii R, Takaki E, Katiyar A, Nakato R, Shirahige K,Nakai A.

        The HSF1-PARP13-PARP1 complex facilitates DNA repair and promotes mammary tumorigenesis.
        Nat Commun.2017 Nov 21;8(1):1638. doi: 10.1038/s41467-017-01807-7. [PubMed]

  34. Frattini C, Villa-Hernández S, Pellicanò G, Jossen R, Katou Y, Shirahige K,Bermejo R.

        Cohesin Ubiquitylation and Mobilization Facilitate Stalled Replication Fork Dynamics.
        Mol Cell.2017 Nov 16;68(4):758-772.e4. doi: 10.1016/j.molcel.2017.10.012. Epub 2017 Nov 9. [PubMed]

  35. Suzuki A, Kawano S, Mitsuyama T, Suyama M, Kanai Y, Shirahige K,Sasaki H, Tokunaga K, Tsuchihara K, Sugano S, Nakai K, Suzuki Y.

        DBTSS/DBKERO for integrated analysis of transcriptional regulation.
        Nucleic Acids Res.2018 Jan 4;46(D1):D229-D238. doi: 10.1093/nar/gkx1001. [PubMed]

    36. ↑Back to menu

    2017


  36. Ogura Y, Gotoh Y, Itoh T, Sato MP, Seto K, Yoshino S, Isobe J, Etoh Y, Kurogi M, Kimata K, Maeda E, Piérard D, Kusumoto M, Akiba M, Tominaga K, Kirino Y, Kato Y, Shirahige K,Ooka T, Ishijima N, Lee KI, Iyoda S, Mainil JG, Hayashi T.

        Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages.
        Microb Genom.Reports.2017 Nov;3(11). doi: 10.1099/mgen.0.000141. [PubMed]

  37. Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, Okamoto R, Yoshimura M, DeRango-Adem E, van Leeuwen J, Shirahige K,Baryshnikova A, Brown GW, Hirano H, Costanzo M, Andrews B, Ohya Y, Osada H, Yoshida M, Myers CL, Boone C.

        Errata: Functional annotation of chemical libraries across diverse biological processes.
        Nat Commun.2017 Nov 21;13(12):1286. doi: 10.1038/nchembio1217-1286b. [PubMed]

  38. Fujimoto M, Takii R, Takaki E, Katiyar A, Nakato R, Shirahige K,Nakai A.

        The HSF1-PARP13-PARP1 complex facilitates DNA repair and promotes mammary tumorigenesis.
        Nat Commun.2017 Nov 21;8(1):1638. doi: 10.1038/s41467-017-01807-7. [PubMed]

  39. Frattini C, Villa-Hernández S, Pellicanò G, Jossen R, Katou Y, Shirahige K,Bermejo R.

        Cohesin Ubiquitylation and Mobilization Facilitate Stalled Replication Fork Dynamics.
        Mol Cell.2017 Nov 16;68(4):758-772.e4. doi: 10.1016/j.molcel.2017.10.012. Epub 2017 Nov 9. [PubMed]

  40. Suzuki A, Kawano S, Mitsuyama T, Suyama M, Kanai Y, Shirahige K,Sasaki H, Tokunaga K, Tsuchihara K, Sugano S, Nakai K, Suzuki Y.

        DBTSS/DBKERO for integrated analysis of transcriptional regulation.
        Nucleic Acids Res.2018 Jan 4;46(D1):D229-D238. doi: 10.1093/nar/gkx1001. [PubMed]

  41. Hirano T, Nishiyama T, Shirahige K

        Hot debate in hot springs: Report on the second international meeting on SMC proteins.
        Genes Cells.2017 Nov;22(11):934-938. doi: 10.1111/gtc.12539. Epub 2017 Oct 25. [PubMed]

  42. Nakato R, Shirahige K

        Statistical Analysis and Quality Assessment of ChIP-seq Data with DROMPA.
        Methods Mol Biol. 2018;1672:631-643. doi: 10.1007/978-1-4939-7306-4_41. [PubMed]

  43. Tsujioka H, Kunieda T, Katou Y, Shirahige K,Fukazawa T, Kubo T.

        interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration.
        Nat Commun.2017 Sep 8;8(1):495. doi: 10.1038/s41467-017-00594-5. [PubMed]

  44. Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, Okamoto R, Yoshimura M, DeRango-Adem E, van Leeuwen J, Shirahige K,Baryshnikova A, Brown GW, Hirano H, Costanzo M, Andrews B, Ohya Y, Osada H, Yoshida M, Myers CL, Boone C.

        Functional annotation of chemical libraries across diverse biological processes.
        Nat Chem Biol.2017 Sep;13(9):982-993. doi: 10.1038/nchembio.2436. Epub 2017 Jul 24. Erratum in: Nat Chem Biol. 2017 Nov 21;13(12 ):1286. Nat Chem Biol. 2017 Nov 21;13(12 ):1286. [PubMed]

  45. Koui Y, Kido T, Ito T, Oyama H, Chen SW, Katou Y, Shirahige K,Miyajima A.

        An In Vitro Human Liver Model by iPSC-Derived Parenchymal and Non-parenchymal Cells.
        Stem Cell Reports. 2017 Aug 8;9(2):490-498. doi: 10.1016/j.stemcr.2017.06.010. Epub 2017 Jul 27. [PubMed]

  46. Bleuyard JY, Fournier M, Nakato R, Couturier AM, Katou Y, Ralf C, Hester SS, Dominguez D, Rhodes D, Humphrey TC, Shirahige K,Esashi F.

        MRG15-mediated tethering of PALB2 to unperturbed chromatin protects active genes from genotoxic stress.
        Proc Natl Acad Sci U S A. 2017 Jul 18;114(29):7671-7676. doi: 10.1073/pnas.1620208114. Epub 2017 Jul 3. [PubMed]

  47. Kagami A, Sakuno T, Yamagishi Y, Ishiguro T, Tsukahara T, Shirahige K,Tanaka K, Watanabe Y.

        Acetylation regulates monopolar attachment at multiple levels during meiosis I in fission yeast.
        EMBO Rep.2017 Jul;18(7):1263. doi: 10.15252/embr.201744401. No abstract available. [PubMed]

  48. Sakai A, Nakato R, Ling Y, Hou X, Hara N, Iijima T, Yanagawa Y, Kuwano R, Okuda S, Shirahige K,Sugiyama S.

        Genome-Wide Target Analyses of Otx2 Homeoprotein in Postnatal Cortex.
        Front Neurosci.2017 May 31;11:307. doi: 10.3389/fnins.2017.00307. eCollection 2017. [PubMed]

  49. Zhang J, Shi D, Li X, Ding L, Tang J, Liu C, Shirahige K,Cao Q, Lou H.

        Rtt101-Mms1-Mms22 coordinates replication-coupled sister chromatid cohesion and nucleosome assembly.
        EMBO Rep.2017 Aug;18(8):1294-1305. doi: 10.15252/embr.201643807. Epub 2017 Jun 14. [PubMed]

  50. Murakami S, Minami-Ohtsubo M, Nakato R, Shirahige K,Tabata T.

        Two Components of Aversive Memory in Drosophila, Anesthesia-Sensitive and Anesthesia-Resistant Memory, Require Distinct Domains Within the Rgk1 Small GTPase.
        J Neurosci. 2017 May 31;37(22):5496-5510. doi: 10.1523/JNEUROSCI.3648-16.2017. Epub 2017 Apr 17. [PubMed]

  51. Fujita Y, Masuda K, Bando M, Nakato R, Katou Y, Tanaka T, Nakayama M, Takao K, Miyakawa T, Tanaka T, Ago Y, Hashimoto H, Shirahige K, Yamashita T.

        Decreased cohesin in the brain leads to defective synapse development and anxiety-related behavior.
        J Exp Med.2017 May1;214(5):1431-1452. doi: 10.1084/jem.20161517. Epub 2017 Apr 13. [PubMed]

  52. Hada M, Masuda K, Yamaguchi K, Shirahige K,Okada Y.

        Identification of a variant-specific phosphorylation of TH2A during spermiogenesis.
        Sci Rep.2017 Apr 7;7:46228. doi: 10.1038/srep46228. [PubMed]

  53. Kline AD, Krantz ID, Deardorff MA, Shirahige K,Dorsett D, Gerton JL, Wu M, Mehta D, Mills JA, Carrico CS, Noon S, Herrera PS, Horsfield JA, Bettale C, Morgan J, Huisman SA, Moss J, McCleery J, Grados M, Hansen BD, Srivastava S, Taylor-Snell E, Kerr LM, Katz O, Calof AL, Musio A, Egense A, Haaland RE.

        Cornelia de Lange syndrome and molecular implications of the cohesin complex: Abstracts from the 7th biennial scientific and educational symposium 2016.
        Am J Med Genet A.2017 May;173(5):1172-1185. doi: 10.1002/ajmg.a.38161. Epub 2017 Feb 12. [PubMed]

    54. ↑Back to menu

    2016


  54. Stunnenberg HG; International Human Epigenome Consortium, Hirst M.

        The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery.
        Cell.2016 Nov 17;167(5):1145-1149. doi: 10.1016/j.cell.2016.11.007. Erratum in: Cell. 2016 Dec 15;167(7):1897. [PubMed]

  55. Sakata T, Shirahige K, Sutani T.

        ChIP-seq Analysis of Condensin Complex in Cultured Mammalian Cells.
        Methods Mol Biol.2017;1515:257-271. [PubMed]

  56. Taniue K, Kurimoto A, Takeda Y, Nagashima T, Okada-Hatakeyama M, Katou Y, Shirahige K, Akiyama T.

        ASBEL-TCF3 complex is required for the tumorigenicity of colorectal cancer cells.
        Proc Natl Acad Sci U S A.2016 Nov 8;113(45):12739-12744. doi: 10.1073/pnas.1605938113. Epub 2016 Oct 21. [PubMed]

  57. Abe T, Kawasumi R, Arakawa H, Hori T, Shirahige K, Losada A, Fukagawa T, Branzei D.

        Chromatin determinants of the inner-centromere rely on replication factors with functions that impart cohesion.
        Oncotarget. 2016 Oct 18;7(42):67934-67947. doi: 10.18632/oncotarget.11982. [PubMed]

  58. Kawasaki Y, Komiya M, Matsumura K, Negishi L, Suda S, Okuno M, Yokota N, Osada T, Nagashima T, Hiyoshi M, Okada-Hatakeyama M, Kitayama J, Shirahige K, Akiyama T.

        MYU, a Target lncRNA for Wnt/c-Myc Signaling, Mediates Induction of CDK6 to Promote Cell Cycle Progression.
        Cell Rep.2016 Sep 6;16(10):2554-2564. doi: 10.1016/j.celrep.2016.08.015. Epub 2016 Aug 25. [PubMed]

  59. Nishi E, Masuda K, Arakawa M, Kawame H, Kosho T, Kitahara M, Kubota N, Hidaka E, Katoh Y, Shirahige K, Izumi K.

        Exome sequencing-based identification of mutations in non-syndromic genes among individuals with apparently syndromic features.
        Am J Med Genet A. 2016 Nov;170(11):2889-2894. doi: 10.1002/ajmg.a.37826. Epub 2016 Aug 26. [PubMed]

  60. Sutani T, Shirahige K

        Attaching Accessory Devices to the Replisome.
        Mol Cell. 2016 Aug 4;63(3):347-8. doi: 10.1016/j.molcel.2016.07.017. [PubMed]

  61. Izumi K, Brett M, Nishi E, Drunat S, Tan ES, Fujiki K, Lebon S, Cham B, Masuda K, Arakawa M, Jacquinet A, Yamazumi Y, Chen ST, Verloes A, Okada Y, Katou Y, Nakamura T, Akiyama T, Gressens P, Foo R, Passemard S, Tan EC, El Ghouzzi V, Shirahige K

        ARCN1 Mutations Cause a Recognizable Craniofacial Syndrome Due to COPI-Mediated Transport Defects.
        Am J Hum Genet. 2016 Aug 4;99(2):451-9. doi: 10.1016/j.ajhg.2016.06.011. Epub 2016 Jul 28. [PubMed]

  62. Pakchuen S, Ishibashi M, Takakusagi E, Shirahige K, Sutani T.

        Physical Association of Saccharomyces cerevisiae Polo-like Kinase Cdc5 with Chromosomal Cohesin Facilitates DNA Damage Response.
        J Biol Chem.2016 Aug 12;291(33):17228-46. doi: 10.1074/jbc.M116.727438. Epub 2016 Jun 20. [PubMed]

  63. Fujiki K, Shirahige K, Kaur M, Deardorff MA, Conlin LK, Krantz ID, Izumi K.

        Mosaic ratio quantification of isochromosome 12p in Pallister-Killian syndrome using droplet digital PCR.
        Mol Genet Genomic Med.2016 Jan 20;4(3):257-61. doi: 10.1002/mgg3.200. eCollection 2016 May. [PubMed]

  64. Koya J, Kataoka K, Sato T, Bando M, Kato Y, Tsuruta-Kishino T, Kobayashi H, Narukawa K, Miyoshi H, Shirahige K, Kurokawa M.

        DNMT3A R882 mutants interact with polycomb proteins to block haematopoietic stem and leukaemic cell differentiation.
        Nat Commun.2016 Mar 24;7:10924. doi: 10.1038/ncomms10924. [PubMed]

  65. Yoshida K, Renard-Guillet C, Inoue K, Shirahige K, Okada-Hatakeyama M, Ishii S.

        Microarray expression analysis of genes involved in innate immune memory in peritoneal macrophages.
        Genom Data.2015 Dec 1;7:90-1. doi: 10.1016/j.gdata.2015.11.028. eCollection 2016 Mar. [PubMed]

  66. Nakato R, Shirahige K

        Microarray expression analysis of genes involved in innate immune memory in peritoneal macrophages.
        Brief Bioinform.2017 Mar 1;18(2):279-290. doi: 10.1093/bib/bbw023. Review. [PubMed]

    67. ↑Back to menu

    2015


  67. Yoshida K, Maekawa T, Zhu Y, Renard-Guillet C, Chatton B, Inoue K, Uchiyama T, Ishibashi KI, Yamada T, Ohno N, Shirahige K, Okada-Hatakeyama M, Ishii S.

        The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory.
        Nat Immunol.2015 Jul 23;6:7815. doi: 10.1038/ncomms8815. [PubMed]

  68. Kubota T, Katou Y, Nakato R, Shirahige K, Donaldson AD.

        Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation.
        Cell Rep.22015 Aug 4;12(5):774-87. doi: 10.1016/j.celrep.2015.06.066. Epub 2015 Jul 23. [PubMed]

  69. Sutani T, Sakata T, Nakato R, Masuda K, Ishibashi M, Yamashita D, Suzuki Y, Hirano T, Bando M, Shirahige K.

        Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation.
        Nat Commun.2015 Jul 23;6:7815. doi: 10.1038/ncomms8815. [PubMed] [Overview]

  70. Chen S, Okada M, Nakato R, Izumi K, Bando M, Shirahige K.

        The Deubiquitinating Enzyme USP7 Regulates Androgen Receptor Activity by Modulating Its Binding to Chromatin.
        J Biol Chem.2015 Jul 14. pii: jbc.M114.628255. [Epub ahead of print] [PubMed]

  71. Balint A, Kim T, Gallo D, Cussiol JR, Bastos de Oliveira FM, Yimit A, Ou J, Nakato R, Gurevich A, Shirahige K, Smolka MB, Zhang Z, Brown GW.

        Assembly of Slx4 signaling complexes behind DNA replication forks.
        EMBO J.2015 Jun 25. pii: e201591190. [Epub ahead of print] [PubMed]

  72. Minamino M, Ishibashi M, Nakato R, Akiyama K, Tanaka H, Kato Y, Negishi L, Hirota T, Sutani T, Bando M, Shirahige K.

        Esco1 Acetylates Cohesin via a Mechanism Different from That of Esco2.
        Curr Biol.2015 Jun 29;25(13):1694-706. doi: 10.1016/j.cub.2015.05.017. Epub 2015 Jun 4. [PubMed] [Overview]

  73. Ikeda A, Muneoka T, Murakami S, Hirota A, Yabuki Y, Karashima T, Nakazono K, Tsuruno M, Pichler H, Shirahige K, Kodama Y, Shimamoto T, Mizuta K, Funato K.

        Sphingolipids regulate telomere clustering by affecting the transcription of genes involved in telomere homeostasis.
        J Cell Sci.2015 Jul 15;128(14):2454-67. doi: 10.1242/jcs.164160. Epub 2015 Jun 4. [PubMed]

  74. Kurimoto K, Yabuta Y, Hayashi K, Ohta H, Kiyonari H, Mitani T, Moritoki Y, Kohri K, Kimura H, Yamamoto T, Katou Y, Shirahige K, Saitou M.

        Quantitative Dynamics of Chromatin Remodeling during Germ Cell Specification from Mouse Embryonic Stem Cells.
        Cell Stem Cell.2015 Mar 18. pii: S1934-5909(15)00113-7. doi: 10.1016/j.stem.2015.03.002. [Epub ahead of print] [PubMed]

  75. Tsujioka H, Kunieda T, Katou Y, Shirahige K, Kubo T.

        Unique Gene Expression Profile of the Proliferating Xenopus Tadpole Tail Blastema Cells Deciphered by RNA-Sequencing Analysis.
        PLoS One.2015 Mar 16;10(3):e0111655. doi: 10.1371/journal.pone.0111655. eCollection 2015. [PubMed]

  76. Izumi K, Nakato R, Zhang Z, Edmondson AC, Noon S, Dulik MC, Rajagopalan R, Venditti CP, Gripp K, Samanich J, Zackai EH, Deardorff MA, Clark D, Allen JL, Dorsett D, Misulovin Z, Komata M, Bando M, Kaur M, Katou Y, Shirahige K, Krantz ID.

        Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin.
        Nat Genet.2015 Mar 2. doi: 10.1038/ng.3229. [Epub ahead of print] [PubMed] [Overview]

  77. Park SJ, Shirahige K, Ohsugi M, Nakai K.

        DBTMEE: a database of transcriptome in mouse early embryos.
        Nucleic Acids Res.2015 Jan;43(Database issue):D771-6. doi: 10.1093/nar/gku1001. Epub 2014 Oct 21. [PubMed]

  78. Jeppsson K, Carlborg KK, Nakato R, Berta DG, Lilienthal I, Kanno T, Lindqvist A, Brink MC, Dantuma NP, Katou Y, Shirahige K, Sjögren C.

        The chromosomal association of the Smc5/6 complex depends on cohesion and predicts the level of sister chromatid entanglement.
        PLoS Genet.2014 Oct 16;10(10):e1004680. doi: 10.1371/journal.pgen.1004680. eCollection 2014 Oct. [PubMed]

  79. Takii R, Fujimoto M, Tan K, Takaki E, Hayashida N, Nakato R, Shirahige K, Nakai A.

        ATF1 modulates the heat shock response by regulating the stress-inducible heat shock factor 1 transcription complex.
        Mol Cell Biol.2015 Jan;35(1):11-25. doi: 10.1128/MCB.00754-14. Epub 2014 Oct 13. [PubMed]

    80. ↑Back to menu

    2014


  80. Takai H, Masuda K, Sato T, Sakaguchi Y, Suzuki T, Suzuki T, Koyama-Nasu R, Nasu-Nishimura Y, Katou Y, Ogawa H, Morishita Y, Kozuka-Hata H, Oyama M, Todo T, Ino Y, Mukasa A, Saito N, Toyoshima C, Shirahige K, Akiyama T.

        5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex.
        Cell Rep.2014 Oct 9;9(1):48-60. doi: 10.1016/j.celrep.2014.08.071. Epub 2014 Oct 2. [PubMed]

  81. Jeppsson K, Kanno T, Shirahige K, Sjögren C.

        The maintenance of chromosome structure: positioning and functioning of SMC complexes.
        Nat Rev Mol Cell Biol.2014 Sep;15(9):601-14. doi: 10.1038/nrm3857. Review. [PubMed]

  82. Suda N, Itoh T, Nakato R, Shirakawa D, Bando M, Katou Y, Kataoka K, Shirahige K, Tickle C, Tanaka M.

        Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis.
        Development.2014 Jul;141(14):2885-94. doi: 10.1242/dev.099150. [PubMed]

  83. Komata M, Katou Y, Tanaka H, Nakato R, Shirahige K, Bando M.

        Chromatin immunoprecipitation protocol for mammalian cells.
        Methods Mol Biol.2014;1164:33-8. doi: 10.1007/978-1-4939-0805-9_4. [PubMed]

  84. Yata K, Bleuyard JY, Nakato R, Ralf C, Katou Y, Schwab RA, Niedzwiedz W, Shirahige K, Esashi F.

        BRCA2 coordinates the activities of cell-cycle kinases to promote genome stability.
        Cell Rep.2014 Jun 12;7(5):1547-59. doi: 10.1016/j.celrep.2014.04.023. Epub 2014 May 15. [PubMed]

  85. Renard-Guillet C, Kanoh Y, Shirahige K, Masai H.

        Temporal and spatial regulation of eukaryotic DNA replication: from regulated initiation to genome-scale timing program.
        Semin Cell Dev Biol.2014 Jun;30:110-20. doi: 10.1016/j.semcdb.2014.04.014. Epub 2014 Apr 13. Review. [PubMed]

  86. Aoi Y, Sato M, Sutani T, Shirahige K, Kapoor TM, Kawashima SA.

        Dissecting the first and the second meiotic divisions using a marker-less drug-hypersensitive fission yeast.
        Cell Cycle.2014;13(8):1327-34. doi: 10.4161/cc.28294. Epub 2014 Mar 3. [PubMed]

  87. Murakami-Tonami Y, Kishida S, Takeuchi I, Katou Y, Maris JM, Ichikawa H, Kondo Y, Sekido Y, Shirahige K, Murakami H, Kadomatsu K.

        Inactivation of SMC2 shows a synergistic lethal response in MYCN-amplified neuroblastoma cells.
        Cell Cycle.2014;13(7):1115-31. doi: 10.4161/cc.27983. Epub 2014 Feb 7. [PubMed]

  88. Shinagawa T, Takagi T, Tsukamoto D, Tomaru C, Huynh LM, Sivaraman P, Kumarevel T, Inoue K, Nakato R, Katou Y, Sado T, Takahashi S, Ogura A, Shirahige K, Ishii S.

        Histone variants enriched in oocytes enhance reprogramming to induced pluripotent stem cells.
        Cell Stem Cell.2014 Feb 6;14(2):217-27. doi: 10.1016/j.stem.2013.12.015. [PubMed]

  89. Suzuki T, Muto N, Bando M, Itoh Y, Masaki A, Ri M, Ota Y, Nakagawa H, Iida S, Shirahige K, Miyata N.

        Design, Synthesis, and Biological Activity of NCC149 Derivatives as Histone Deacetylase 8-Selective Inhibitors.
        ChemMedChem. 2014 Jan 8. doi: 10.1002/cmdc.201300414. [PubMed]

  90. Kaiser FJ, Ansari M, Braunholz D, Concepción Gil-Rodríguez M, Decroos C, Wilde JJ, Fincher CT, Kaur M, Bando M, Amor DJ, Atwal PS, Bahlo M, Bowman CM, Bradley JJ, Brunner HG, Clark D, Del Campo M, Di Donato N, Diakumis P, Dubbs H, Dyment DA, Eckhold J, Ernst S, Ferreira JC, Francey LJ, Gehlken U, Guillén-Navarro E, Gyftodimou Y, Hall BD, Hennekam R, Hudgins L, Hullings M, Hunter JM, Yntema H, Innes AM, Kline AD, Krumina Z, Lee H, Leppig K, Lynch SA, Mallozzi MB, Mannini L, McKee S, Mehta SG, Micule I; Care4Rare Canada Consortium, Mohammed S, Moran E, Mortier GR, Moser JA, Noon SE, Nozaki N, Nunes L, Pappas JG, Penney LS, Pérez-Aytés A, Petersen MB, Puisac B, Revencu N, Roeder E, Saitta S, Scheuerle AE, Schindeler KL, Siu VM, Stark Z, Strom SP, Thiese H, Vater I, Willems P, Williamson K, Wilson LC; University of Washington Center for Mendelian Genomics, Hakonarson H, Quintero-Rivera F, Wierzba J, Musio A, Gillessen-Kaesbach G, Ramos FJ, Jackson LG, Shirahige K, Pié J, Christianson DW, Krantz ID, Fitzpatrick DR, Deardorff MA..

        Loss-of-function HDAC8 mutations cause a phenotypic spectrum of Cornelia de Lange syndrome-like features, ocular hypertelorism, large fontanelle and X-linked inheritance.
        Hum Mol Genet. 2014 Jan 31. [PubMed]

    91. ↑Back to menu

    2013


  91. Park SJ, Komata M, Inoue F, Yamada K, Nakai K, Ohsugi M, Shirahige K.

        Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis.
        Genes Dev. 2013 Dec 15;27(24):2736-48. doi: 10.1101/gad.227926.113. [PubMed]

  92. Aramaki S, Hayashi K, Kurimoto K, Ohta H, Yabuta Y, Iwanari H, Mochizuki Y, Hamakubo T, Kato Y, Shirahige K, Saitou M.

        A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants.
        Dev Cell. 2013 Dec 9;27(5):516-29. doi: 10.1016/j.devcel.2013.11.001. [PubMed]

  93. Hattori Y, Usui T, Satoh D, Moriyama S, Shimono K, Itoh T, Shirahige K, Uemura T.

        Sensory-Neuron Subtype-Specific Transcriptional Programs Controlling Dendrite Morphogenesis: Genome-wide Analysis of Abrupt and Knot/Collier.
        Dev Cell. 2013 Dec 9;27(5):530-44. doi: 10.1016/j.devcel.2013.10.024. Epub 2013 Nov 27. [PubMed]

  94. Gallego-Paez LM, Tanaka H, Bando M, Takahashi M, Nozaki N, Nakato R, Shirahige K, Hirota T.

        Smc5/6-mediated regulation of replication progression contributes to chromosome assembly during mitosis in human cells.
        Mol Biol Cell.2013 Nov 20. [PubMed]

  95. Muller CA, Hawkins M, Retkute R, Malla S, Wilson R, Blythe MJ, Nakato R, Komata M, Shirahige K, de Moura AP, Nieduszynski CA.

        The dynamics of genome replication using deep sequencing.
        Nucleic Acids Res.2013 Oct 1. [Epub ahead of print] [PubMed]

  96. Kon A, Shih LY, Minamino M, Sanada M, Shiraishi Y, Nagata Y, Yoshida K, Okuno Y, Bando M, Nakato R, Ishikawa S, Sato-Otsubo A, Nagae G, Nishimoto A, Haferlach C, Nowak D, Sato Y, Alpermann T, Nagasaki M, Shimamura T, Tanaka H, Chiba K, Yamamoto R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Nakamaki T, Ishiyama K, Nolte F, Hofmann WK, Miyawaki S, Chiba S, Mori H, Nakauchi H, Koeffler HP, Aburatani H, Haferlach T, Shirahige K, Miyano S, Ogawa S.

        Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms.
        Nat Genet.2013 Oct;45(10):1232-7. doi: 10.1038/ng.2731. Epub 2013 Aug 18. [PubMed]

  97. Fujiki K, Shinoda A, Kano F, Sato R, Shirahige K, Murata M.

        PPARγ-induced PARylation promotes local DNA demethylation by production of 5-hydroxymethylcytosine.
        Nat Commun.2013;4:2262. doi: 10.1038/ncomms3262. [PubMed]

  98. Chan KL, Gligoris T, Upcher W, Kato Y, Shirahige K, Nasmyth K, Beckouet F.

        Pds5 promotes and protects cohesin acetylation.
        Proc Natl Acad Sci U S A.2013 Jul 18;110(32):13020-5. doi: 10.1073/pnas.1306900110. Epub 2013 Jul 22. [PubMed]

  99. Natsume T, Muller CA, Katou Y, Retkute R, Gierli?ski M, Araki H, Blow JJ, Shirahige K, Nieduszynski CA, Tanaka TU.

        Kinetochores coordinate pericentromeric cohesion and early DNA replication by cdc7-dbf4 kinase recruitment.
        Mol Cell. 2013 Jun 6;50(5):661-74. doi: 10.1016/j.molcel.2013.05.011. [PubMed]

  100. Koyama-Nasu R, Haruta R, Nasu-Nishimura Y, Taniue K, Katou Y, Shirahige K, Todo T, Ino Y, Mukasa A, Saito N, Matsui M, Takahashi R, Hoshino-Okubo A, Sugano H, Manabe E, Funato K, Akiyama T.

        The pleiotrophin-ALK axis is required for tumorigenicity of glioblastoma stem cells.
        Oncogene. 2013 May 20. doi: 10.1038/onc.2013.168. [PubMed]

  101. Nakato R, Itoh T, Shirahige K.

        DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data.
        Genes Cells. 2013 Jul;18(7):589-601. doi: 10.1111/gtc.12058. Epub 2013 May 15. [PubMed]

  102. Foltman M, Evrin C, De Piccoli G, Jones RC, Edmondson RD, Katou Y, Nakato R, Shirahige K, Labib K.

        Eukaryotic Replisome Components Cooperate to Process Histones During Chromosome Replication.
        Cell Rep.2013 Mar 28;3(3):892-904. doi: 10.1016/j.celrep.2013.02.028. Epub 2013 Mar 14. [PubMed]

  103. Yamaji M, Ueda J, Hayashi K, Ohta H, Yabuta Y, Kurimoto K, Nakato R, Yamada Y, Shirahige K, Saitou M.

        PRDM14 Ensures Naive Pluripotency through Dual Regulation of Signaling and Epigenetic Pathways in Mouse Embryonic Stem Cells.
        Cell Stem Cell. 2013 Jan 15. doi:pii: S1934-5909(12)00754-0. 10.1016/j.stem.2012.12.012. [PubMed]

  104. Enervald E, Lindgren E, Katou Y, Shirahige K, Strom L.

        Importance of Polη for damage-induced cohesion reveals differential regulation of cohesion establishment at the break site and genome-wide.
        PLoS Genet. 2013 Jan;9(1):e1003158. doi: 10.1371/journal.pgen.1003158. Epub 2013 Jan 10. [PubMed]

    105. ↑Back to menu

    2012-1990


  105. Suzuki T, Ota Y, Ri M, Bando M, Gotoh A, Itoh Y, Tsumoto H, Tatum PR, Mizukami T, Nakagawa H, Iida S, Ueda R, Shirahige K, Miyata N.
        Rapid discovery of highly potent and selective inhibitors of histone deacetylase 8 using click chemistry to generate candidate libraries.
        J Med Chem. 2012 Nov 26;55(22):9562-75. doi: 10.1021/jm300837y. Epub 2012 Nov 12. [PubMed]

  106. Tazumi A, Fukuura M, Nakato R, Kishimoto A, Takenaka T, Ogawa S, Song JH, Takahashi TS, Nakagawa T, Shirahige K, Masukata H.
        Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast.
        Genes Dev.2012 Sep 15;26(18):2050-62. doi: 10.1101/gad.194282.112. [PubMed]

  107. Song J, Lafont A, Chen J, Wu FM, Shirahige K, Rankin S.
        Cohesin acetylation promotes sister chromatid cohesion only in association with the replication machinery.
        J Biol Chem. 2012 Oct 5;287(41):34325-36. doi: 10.1074/jbc.M112.400192. Epub 2012 Aug 15. [PubMed]

  108. Deardorff MA, Bando M, Nakato R, Watrin E, Itoh T, Minamino M, Saitoh K, Komata M, Katou Y, Clark D, Cole KE, De Baere E, Decroos C, Di Donato N, Ernst S, Francey LJ, Gyftodimou Y, Hirashima K, Hullings M, Ishikawa Y, Jaulin C, Kaur M, Kiyono T, Lombardi PM, Magnaghi-Jaulin L, Mortier GR, Nozaki N, Petersen MB, Seimiya H, Siu VM, Suzuki Y, Takagaki K, Wilde JJ, Willems PJ, Prigent C, Gillessen-Kaesbach G, Christianson DW, Kaiser FJ, Jackson LG, Hirota T, Krantz ID, Shirahige K.
        HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle.
        Nature.2012 Sep 13;489(7415):313-7. [PubMed]

  109. Higashi TL, Ikeda M, Tanaka H, Nakagawa T, Bando M, Shirahige K, Kubota Y, Takisawa H, Masukata H, Takahashi TS.
        The prereplication complex recruits XEco2 to chromatin to promote cohesin acetylation in Xenopus egg extracts.
         Curr Biol. 2012 Jun 5;22(11):977-88. Epub 2012 May 3. [PubMed]

  110. De Piccoli G, Katou Y, Itoh T, Nakato R, Shirahige K, Labib K.
        Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases.
         Mol Cell. 2012 Mar 9;45(5):696-704. Epub 2012 Feb 9. [PubMed]

  111. Bustard DE, Menolfi D, Jeppsson K, Ball LG, Dewey SC, Shirahige K, Sjogren C, Branzei D, Cobb JA.
        During replication stress Non-Smc-Element 5 is required for Smc5/6 complex functionality at stalled forks.
        J Biol Chem. 2012 Feb 9. [PubMed]

  112. Hayano M, Kanoh Y, Matsumoto S, Renard-Guillet C, Shirahige K, Masai H.
        Rif1 is a global regulator of timing of replication origin firing in fission yeast.
        Genes Dev. 2012 Jan 15;26(2):137-50. [PubMed]

  113. Davidson MB, Katou Y, Keszthelyi A, Sing TL, Xia T, Ou J, Vaisica JA, Thevakumaran N, Marjavaara L, Myers CL, Chabes A, Shirahige K, Brown GW.
        Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype.
        EMBO J.2012 Jan 10;31(4):895-907. doi: 10.1038/emboj.2011.485. [PubMed]

  114. Tanaka S, Nakato R, Katou Y, Shirahige K, Araki H.
        Origin association of sld3, sld7, and cdc45 proteins is a key step for determination of origin-firing timing.
         Curr Biol. 2011 Dec 20;21(24):2055-63. Epub 2011 Dec 8.

  115. Kagami A, Sakuno T, Yamagishi Y, Ishiguro T, Tsukahara T, Shirahige K, Tanaka K, Watanabe Y.
        Acetylation regulates monopolar attachment at multiple levels during meiosis I in fission yeast.
        EMBO Rep.2011 Oct 28;12(11):1189-95. doi: 10.1038/embor.2011.188.

  116. Panizza S, Mendoza MA, Berlinger M, Huang L, Nicolas A, Shirahige K, Klein F.
        Spo11-accessory proteins link double-strand break sites to the chromosome axis in early meiotic recombination.
        Cell.2011 Aug 5;146(3):372-83.

  117. Bermejo R, Capra T, Jossen R, Colosio A, Frattini C, Carotenuto W, Cocito A, Doksani Y, Klein H, Gomez-Gonzalez B, Aguilera A, Katou Y, Shirahige K, Foiani M.
        The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores.
        Cell.2011 Jul 22;146(2):233-46.

  118. Gomez-Gonzalez B, Garcia-Rubio M, Bermejo R, Gaillard H, Shirahige K, Marin A, Foiani M, Aguilera A.
        Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles.
        EMBO J.2011 Jun 24;30 (15):3106-19. doi: 10.1038/emboj.2011.206.

  119. Leung GP, Lee L, Schmidt TI, Shirahige K, Kobor MS.
        Rtt107 is required for recruitment of the SMC5/6 complex to DNA double strand breaks.
        J Biol Chem.2011 Jul 22;286(29):26250-7. Epub 2011 Jun 3.

  120. Kegel A, Betts-Lindroos H, Kanno T, Jeppsson K, Strom L, Katou Y, Itoh T, Shirahige K, Sjogren C.
        Chromosome length influences replication-induced topological stress.
        Nature.2011 Mar 17;471(7338):392-6. Epub 2011 Mar 2.

  121. Hu B, Itoh T, Mishra A, Katoh Y, Chan KL, Upcher W, Godlee C, Roig MB, Shirahige K, Nasmyth K.
        ATP hydrolysis is required for relocating cohesin from sites occupied by its Scc2/4 loading complex.
        Curr Biol. 2011 Jan 11;21(1):12-24. Epub 2010 Dec 23.

  122. Maruyama H, Shin M, Oda T, Matsumi R, Ohniwa RL, Itoh T, Shirahige K, Imanaka T, Atomi H, Yoshimura SH, Takeyasu K.
        Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis.
        Mol Biol Cell. 2011 Feb 1;22(3):386-98.

  123. Kurze A, Michie KA, Dixon SE, Mishra A, Itoh T, Khalid S, Strmecki L, Shirahige K, Haering CH, Lowe J, Nasmyth K.
        A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion.
        EMBO J.2011 Jan 19;30(2):364-78. Epub 2010 Dec 7.

  124. K. Ohtsuki, K. Kasahara, K. Shirahige, and T. Kokubo.
        Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters.
        Nucleic Acids Res. 38, 1805-1820 (2010).

  125. A. Mishra, B. Hu, F. Beckouet, A. F. Kurze, A. M. Farcas, S.E. Dixon, Y. Katou, S. Khalid, K. Shirahige, and K. Nasmyth.
        Both interaction surfaces within cohesin's hinge domain are essential for its stable chromosomal association.
        Curr Biol.20:279-289. (2010)

  126. J. Liu, Z. Zhang, M. Bando, T. Itoh, M.A. Deardorff, J.R. Li, D. Clark, M. Kaur, K. Tatsuro, A.D. Kline, C. Chang, H. Vega, L. G. Jackson, N. B. Spinner, K. Shirahige, and I. D. Krantz
        Genome-wide DNA methylation analysis in cohesin mutant human cell lines.
        Nucleic Acids Res.38:5657-5671. (2010)

  127. D. Fachinetti, R. Bermejo, A. Cocito, S. Minardi, Y. Katou, Y. Kanoh, K. Shirahige, A. Azvolinsky, V. A. Zakian, M. Foiani.
        Replication termination at eukaryotic chromosomes is mediated by Top2 and occurs at genomic loci containing pausing elements.
        Mol Cell.39:595-605.(2010)

  128. F. Beckouet, B. Hu, M.B. Roing, T. Sutani, M. Komata, P. Uluocak, V. L. Katis, K. Shirahige, and K. Nasmyth.
        An Smc3 acetylation cycle is essential for establishment of sister chromatid cohesion.
        Mol Cell.39:689-699 (2010)

  129. A. Pauli, J. G. van Bemmel , T. Itoh, K. Shirahige, B. van Steensel, and K. Nasmyth.
        A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands.
        Curr Biol.20:1787-1798 (2010)

  130. K. Kuroha, M. Akamatsu, L. Dimitroya, T. Itoh, Y. Kato, K. Shirahige, and T. Inada.
        Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest.
        EMBO Rep. 11:956-961 (2010)

  131. V. Rossio, E. Galati, M. Ferrari, A. Pellicioli, T. Sutani, K. Shirahige, G. Luccini, and S. Piatti.
        The RSC chromatin-remodeling complex influences mitotic exit and adaptation to the spindle assembly checkpoint by controlling the Cdc14 phosphatase.
        J Cell Biol. 191:981-997 (2010)

  132. T. Nishiyama, R. Ladurner, J. Schmitz, E. Kreidl, A. Scheleiffer, V. Bhaskara, M. Bando, K. Shirahige, A.A. Hyman, K. Mechtler, and J.M. Peters.
        Sororin mediates sister chromatid cohesion by antagonizing Wapl.
        Cell. 143:737-749 (2010)

  133. A. Kurze , K.A.Michie, S.E.Dixon, A. Mishra, T. Itoh, S. Khalid, L. Strmecki, K. Shirahige, C. H. Hearing, J. Lowe, and K. Nasmyth.
        A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion.
        EMBO J.2010 Dec 7. [Epub ahead of print]

  134. H. Maruyama, M. Shin, T. Oda, R. Matsumi, R.L. Ohniwa, T. Itoh, K. Shirahige, T. Imanaka, H. Atomi, S. H. Yoshimura, and K. Takeyasu.
        Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis.
        Mol Biol Cell.2010 Dec 9. [Epub ahead of print]

  135. B. Hu#, T. Itoh#, A. Mishra, Y. Katoh, K-L. Chan, W. Upcher, C. Godlee, M. B. Roig, K. Shirahige*, and K. Nasmyth*.
        ATP Hydrolysis Is Required for Relocating Cohesin from Sites Occupied by Its Scc2/4 Loading Complex.
        Curr. Biol.in press (*Shared Corresponding Author) (#Equally contributed author)

  136. A. Kegel, H. B. Lindroos, T. Kanno, K. Jeppsson, L. Strom, Y. Katou, T. Itoh, K. Shirahige*, and C. Sjogren.
        Chromosome length influences replication-induced topological stress.
        Nature in press

  137. K. Ohtsuki, K. Kasahara, K. Shirahige, and T. Kokubo.
        Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters.
        Nucleic Acids Res.2009

  138. S. Mimura, M. Komata, T. Kishi, K. Shirahige, and T. Kamura.
        SCF(Dia2) regulates DNA replication forks during S-phase in budding yeast.
        EMBO J.28, 3693-3705 (2009)

  139. Y. Wada, Y. Ohta, M. Xu, S. Tsutsumi, T. Minami, K. Inoue, D. Komura, J. Kitakami, N. Oshida, A. Papantonis, A. Izumi, M. Kobayashi, H. Meguro, Y. Kanki, I. Mimura, K. Yamamoto, C. Mataki, T. Hamakubo, K. Shirahige, H. Aburatani, H. Kimura, T. Kodama, P.R.Cook, and S. Ihara.
        A wave of nascent transcription on activated human genes.
        Proc Natl Acad Sci U S A. 106, 18357-18361 (2009)

  140. M. Bando, Y.M. Katou, M. Komata, H. Tanaka, T. Itoh, T. Sutani, and K. Shirahige.
        Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks.
        J Biol Chem. 284, 34355-34365 (2009)

  141. R. Bermejo, Y. M. Katou, K. Shirahige, and M. Foiani.
        ChIP-on-Chip Analysis of DNA Topoisomerases.
        Methods Mol Biol. 582, 103-118, (2009)

  142. K. B. Falbo*, C. Alabert*, Y. Katou*, S. Wu, J. Han, T. Wehr, J. Xiao, X. He, Z. Zhang, Y. Shi, K. Shirahige, P. Pasero, and X. Shen.
        Involvement of a chromatin remodeling complex in damage tolerance during DNA replication.
         Nat. Struct. Mol. Biol.16, 1167-1172 (2009)

  143. R. Bermejo, T. Capra, V. Gonzales-Huici, D. Fachinetti, A. Cocito, G. Natoli, Y. Katou, H. Mori, K. Kurokawa, K. Shirahige, and M. Foiani.
        Genome-Organizing Factors Top2 and Hmo1 Prevent Chromosome Fragility at Sites of S phase Transcription.
        Cell, 138, 870-884, (2009)

  144. T. Kobayashi, H. Mizuno, I. Imayoshi, C. Furusawa, K. Shirahige, and R. Kageyama.
        The cyclic gene Hes1 contributes to diverse differentiation responses of embryonic stem cells.
        Genes Dev. 23, 1870-1875, (2009)

  145. M. Komata, M. Bando, H. Araki, and K. Shirahige.
        The Direct Binding of Mrc1, a Checkpoint Mediator, to Mcm6, a Replication Helicase, is Essential for Replication Checkpoint Against Methyl Methanesulfonate?induced Stress.
        Mol. Cell. Biol.29, 5008-5019 (2009)

  146. K. Kugou, T. Fukuda, S. Yamada, M. Ito, H. Sasanuma, S. Mori, Y. Katou, T. Itoh, K. Matsumoto , T. Shibata, K. Shirahige, and K. Ohta.
        Rec8 guides canonical Spo11 distribution along yeast meiotic chromosomes.
        Mol Biol Cell. 20, 3064-3076, (2009)

  147. H. Tanaka, Y. Katou, M. Yagura, K. Saitoh, T. Itoh, H. Araki, M. Bando#, and K. Shirahige#.
        Ctf4 coordinates the progression of helicase and DNA polymerase alpha.
        Genes Cells.4, 807-820, (2009) (#Shared Corresponding Author)

  148. J. Liu, Z. Zhang, M. Bando, T. Itoh, M.A. Deardorff, D. Clark, M. Kaur, S. Tandy, T. Kondoh, E. Rappaport, N.B.Spinner, H. Vega, L.G.Jackson, K. Shirahige, and I.D.Krantz.
        Transcriptional dysregulation in NIPBL and cohesin mutant human cells.
        PLoS Biol. 7, e1000119. (2009)

  149. K. Takayama, S. Tsutsumi, T. Suzuki, K. Horie-Inoue, K. Ikeda, K. Kaneshiro, T. Fujimura, J. Kumagai, T. Urano, Y. Sakaki, K. Shirahige, H. Sasano, S. Takahashi, T. Kitamura, Y. Ouchi, H. Aburatani, and S. Inoue.
        Amyloid precursor protein is a primary androgen target gene that promotes prostate cancer growth.
        Cancer Res.69, 137-142, (2009)

  150. T. Mishiro, K. Ishihara, S. Hino, S. Tsutsumi, H. Aburatani, K. Shirahige, Y. Kinoshita, and M. Nakao.
        Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster.
        EMBO J. 28, 1234-1245, (2009)

  151. T. Sutani, T. Kawaguchi, R. Kanno, T. Itoh, and K. Shirahige.
        Budding Yeast Wpl1(Rad61)-Pds5 Complex Counteracts Sister Chromatid Cohesion- Establishing Reaction.
        Curr. Biol.19, 492-497, (2009)

  152. M. Nishizawa, T. Komai, Y. Katou, K. Shirahige, T. Itoh, and A. Toh-E.
        Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast.
        PLoS Biol. 6, 2817-2830 (2008).

  153. K. Nakamura, A. Okamoto, Y. Katou, C. Yadani, T. Shitanda, C. Kaweeteerawat, T.S. Takahashi, T. Itoh, K. Shirahige, H. Masukata, and T. Nakagawa.
        Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe.
        EMBO J. 27, 3036-3046 (2008)

  154. M. Sadaie, R. Kawaguchi, Y. Ohtani,F. Arisaka, K. Tanaka, K. Shirahige, J. Nakayama.
        Balance between distinct HP1 family proteins controls heterochromatin assembly in fission yeast.
        Mol Cell Biol. 28, 6973-6988 (2008)

  155. C. D'Ambrosio, C.K.Schmidt, Y. Katou, G. Kelly, T. Itoh, K. Shirahige, and F. Uhlmann.
        Identification of cis-acting sites for condensin loading onto budding yeast chromosomes.
        Genes Dev. 22, 2215-2227 (2008)

  156. H. Lou, M. Komata, Y. Katou, Z. Guan, C. C. Reis, M. Budd, K. Shirahige, J.L. Campbell.
        Mrc1 and DNA polymerase ε function together in linking DNA replication and the S phase checkpoint.
        Mol.Cell 32, 106-117 (2008)

  157. K. S. Wendt*, K. Yoshida*, T. Itoh*, M. Bando, B. Koch, E. Schirghuber, S. Tsutsumi, G. Nagae, K. Ishihara, T. Mishiro, K. Yahata, F. Imamoto, H. Aburatani, M. Nakao, N. Imamoto, K. Maeshima, K. Shirahige#, and J.-M. Peters#.
        Cohesin mediates transcriptional insulation by CCCTC-binding factor.
         Nature (article). 451, 796-801, (2008) (*equally contributed author) (#shared corresponding author)

  158. K. Kaneshiro, S. Tsutsumi, S. Tsuji, K. Shirahige, and H. Aburatani.
        An integrated map of p53-binding sites and histone modification in the human ENCODE regions.
         Genomics, 89, 178-188 (2007)

  159. S. Ide, K. Watanabe, H. Watanabe, K. Shirahige, T. Kobayashi, and H. Maki.
        Abnormality in initiation program of DNA replication is monitored by the highly repetitive rDNA array on chromosome XII in budding yeast.
         Mol. Cell. Biol., 27, 568-578 (2007)

  160. S. Mori and K. Shirahige.
        Perturbation of the activity of replication origin by meiosis specific transcription.
         J. Biol. Chem.,282, 4447-4452 (2007)

  161. K. Takayama, K. Kaneshiro, S. Tsutsumi, K. Horie-Inoue, K. Ikeda, T. Urano, N. Ijichi, Y. Ouchi, K. Shirahige, H. Aburatani, and S. Inoue.
        Identification of novel androgen response genes in prostate cancer cells by coupling chromatin immunoprecipitation and genomic microarray analysis.
         Oncogene. 26, 4453-4463 (2007)

  162. M. Hayashi, Y. Katou, T. Itoh, M. Tazumi, Y. Yamada, T. Takahashi, T. Nakagawa, K. Shirahige, and H. Masukata.
        Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.
         EMBO J., 26, 1327-1339(2007)

  163. M. Terasawa, H. Ogawa, Y. Tsukamoto, M. Shinohara, K. Shirahige, N. Kleckner, and T. Ogawa.
        Meiotic recombination-related DNA synthesis and its implications for cross-over and non-cross-over recombinant formation.
        Proc Natl Acad Sci U S A. 104, 5965-5970, (2007)

  164. K. Kugou, H. Sasanuma, K. Matsumoto, K. Shirahige, and K. Ohta.
        Mre11 mediates gene regulation in yeast spore development.
        Genes Genet Syst., 82, 21-33 (2007)

  165. L. Strom L, C. Karlsson, H.B.Lindroos, S. Wedahl, Y. Katou, K. Shirahige, and C. Sjogren.
        Postreplicative formation of cohesion is required for repair and induced by a single DNA break.
        Science. 317, 242-245 (2007).

  166. J. Gregan, C. G. Riedel, A. L. Pidoux, Y. Katou, C. Rumpf, A. Schleiffer, S. E. Kearsey, K. Shirahige, R.C. Allshire, and K. Nasmyth.
        The Kinetochore Proteins Pcs1 and Mde4 and Heterochromatin Are Required to Prevent Merotelic Orientation.
        Curr Biol 17, 1190-200 (2007)

  167. K. Kasahara, K. Ohtsuki, S. Ki, K. Aoyama, H. Takahashi, T. Kobayashi, K. Shirahige, and T. Kokubo.
        Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae.
        Mol Cell Biol. 27, 6686-6705 (2007)

  168. R. Bermejo, Y. Doksani, T. Capra, Y. M. Katou, H. Tanaka, K. Shirahige*, and M. Foiani*.
        Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation.
        Genes Dev.21, 1921-1936 (2007) (*shared corresponding author).

  169. M. T. Ocampo-Hafalla, Y. Katou, K. Shirahige, F. Uhlmann.
        Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting.
        Chromosoma. 116, 531-544 (2007)

  170. D.Q. Ding, N. Sakurai, Y. Katou, T. Itoh, K. Shirahige, T. Haraguchi, and Y. Hiraoka.
        Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast.
        J Cell Biol.,174, 499-508 (2006)

  171. A. Lengronne, J. McIntyre, Y. Katou, Y. Kanoh, K. P. Hopfner, K. Shirahige, and F. Uhlmann.
        Establishment of Sister Chromatid Cohesion at the S. cerevisiae Replication Fork.
        Mol Cell.,23, 787-799 (2006)

  172. M. Petronczki, J. Matos, S. Mori, J. Gregan, A. Bogdanova, M. Schwickart, K. Mechtler, K. Shirahige, W. Zachariae, and K. Nasmyth.
        Monopolar attachment of sister kinetochores at meiosis I requires casein kinase 1.
        Cell, 126, 1049-1064 (2006)

  173. S. Gruber, P. Arumugam, Y. Katou, D. Kuglitsch, W. Helmhart, K. Shirahige, and K. Nasmyth.
        Evidence that Loading of Cohesin Onto Chromosomes Involves Opening of Its SMC Hinge.
        Cell, 127, 523-537 (2006)

  174. H.Betts Lindroos, L.Strom, T.Itoh, Y.Katou, K. Shirahige*, and C.Sjogren*.
        Chromosomal Association of the Smc5/6 Complex Reveals that It Functions in Differently Regulated Pathways.
        Mol Cell., 22, 755-767 (2006)(*equally contributed author).

  175. K.Matsui, T.Hirayama, K.Kuroda, K. Shirahige, T.Ashikari, and M.Ueda.
        Screening for candidate genes involved in tolerance to organic solvents in yeast.
        Appl Microbiol Biotechnol. 71, 75-79 (2006)

  176. Y.Kanoh, K.Tamai, and K. Shirahige.
        Different requirements for the association of ATR-ATRIP and 9-1-1 to the stalled replication forks.
        Gene., 377, 88-95 (2006)

  177. C. G. Riedel, V. L. Katis, Y.Katou, S. Mori, T. Itoh, W. Helmhart, M. Galova, M. Petronczki, J. Gregan, B. Cetin, I. Mudrak, E. Ogris, K. Mechtler, L.Pelletier, F. Buchholz, K. Shirahige and K. Nasmyth.
        Protein Phosphatase 2A protects centromeric sister chromatid cohesion.
        Nature (Article) 441,53-61(2006)

  178. Y.Katou,K.Kaneshiro,H.Aburatani,and K. Shirahige.
        Genomic Approach for the Understanding of Dynamic Aspect of Chromosome Behavior.
        METHODS IN ENZYMOLOGY vol.409,chapter 23,389-410 in DNA Repair (edited by J.Campbell) (2006)

  179. K. Unno, P .R . Juvvadi, H. Nakajima, K. Shirahige, and K. Kitamoto.
        Identification and characterization of rns4/vps32 mutation in the RNase T1 expression-sensitive strain of Saccharomyces cerevisiae: Evidence for altered ambient response resulting in transportation of the secretory protein to vacuoles.
        FEMS Yeast Res.5, 801-812 (2005)

  180. Y. Tonami, H.Murakami, K. Shirahige, and M. Nakanishi.
        A checkpoint control linking meiotic S phase and recombination initiation in fission yeast.
        Proc.Natl. Acad. Sci. U.S.A.102, 5797-801 (2005)

  181. H. Tamaki, C.W. Yun, T. Mizutani, T. Tsuzuki, Y. Takagi, M. Shinozaki, Y. Kodama, K. Shirahige, and H. Kumagai.
        Glucose-dependent cell size is regulated by a G protein-coupled receptor system in yeast Saccharomyces cerevisiae.
         Genes Cells.10, 193-206 (2005)

  182. V. L. Katis, J. Matos, S. Mori, K. Shirahige, W. Zachariae, and K. Nasmyth.
        Spo13 Facilitates Monopolin Recruitment to Kinetochores and Regulates Maintenance of Centromeric Cohesion during Yeast Meiosis.
         Curr Biol., 14, 2183-2196 (2004)

  183. L. Strom, H. B. Lindroos, K. Shirahigee, and C. Sjogren.
        S Postreplicative recruitment of Cohesin to double-strand breaks is required for DNA repair.
        Mol. Cell, 16, 1003-1015 (2004)

  184. M. Nishizawa, Y. Katou, K. Shirahige, and A. Toh-E.
        Yeast Pho85 kinase is required for proper gene expression during the diauxic shift.
        Yeast, 21, 903-918 (2004)

  185. A. Lengronne, Y. Katou, S. Mori, S. Yokobayashi, G. Kelly, T. Itoh, Y. Watanabe, K. Shirahige*, and F. Uhlmann*.
        Cohesin relocation from sites of chromosomal loading to places of convergent transcriptions.
        Nature, 430, 573-578 (2004) (*equally contributed author)

  186. H. Takata, Y. Kanoh, N. Gunge, K. Shirahige, and Akira Matsuura.
        Reciprocal association of the budding yeast ATM-related proteins Tel1 and Mec1 with telomeres in vivo.
        Mol.Cell,14, 515-522 (2004)

  187. H. Koyama, T.A. Nagao, T. Inai, K. Miyahara, Y. Hayasida, K. Shirahige and E. Tsuchiya.
        RSC Nucleosome-remodeling complex plays prominent roles in transcriptional regulation throughout budding yeast gametogenesis.
        Biosci Biotechnol Biochem., 68, 909-919 (2004)

  188. Y. Katou, Y. Kanoh, M. Bando, H. Noguchi, H. Tanaka, T. Ashikari, K. Sugimoto, and K. Shirahige.
        S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication pausing complex.
        Nature, 424, 1078-1083, (2003)

  189. A. Marin, M. Gallardo, Y. Kato, K. Shirahige, G. Gutierrez, K. Ohta, and A. Aguilera.
        Relationship between G+C content, ORF-length and mRNA concentration in Saccharomyces cerevisiae.
        Yeast. 20, 703-711, (2003)

  190. K. Ohkuni, K. Shirahige, and A. Kikuchi.
        Genome-wide expression analysis of NAP1 in Saccharomyces cerevisiae.
        Biochem Biophys Res Commun 306, 5-9, (2003)

  191. Y.Kodama, F.Omura, K.Takahashi, K. Shirahige, and T. Ashikari.
        Genome-wide expression analysis of genes affected by amino acid sensor Ssy1p in Saccharomyces cerevisiae.
        Curr.Genetics, 41, 63-72, (2002)

  192. K.-I. Watanabe, J. Morishita, K. Umezu, K. Shirahige and H. Maki.
        Involvement of RAD9-dependent damage checkpoint control in arrest of cell cycle, induction of cell death, and chromosome instability caused by defects in the origin recognition complex in Saccharomyces cerevisiae.
        Eukaryotic Cells, 1, 200-212 (2002)

  193. R.Tadokoro, M.Fujita, H.Miura, K. Shirahige, H.Yoshikawa, T.Tsurimoto, and C.Obuse.
        Scheduled conversion of replication complex architecture at replication origins of S. cerevisiae during the cell cycle.
        J Biol Chem. 277, 15881-15889 (2002)

  194. Y. Katoh, H. Noguchi, T. Yada, S. Mori, M. Hiraoka, Y. Sakaki, H. Yoshikawa, and K. Shirahige.
        Regulation of initiation of DNA replication from multiple replication origins on a single chromosome.
        Yeast, 18, S43 (2001)

  195. J. M. Kim, H. Yoshikawa and K. Shirahige.
        A member of the YER057c/yjgf/Uk114 family links isoleucine biosynthesis and intact mitochondria maintenance in Saccharomyces cerevisiae.
        Genes Cells, 6, 507-517 (2001)

  196. M. Radji, J.M. Kim, T. Togan, H. Yoshikawa and K. Shirahige.
        The cloning and characterization of the CDC50 gene family in Saccharomyces cerevisiae.
        Yeast, 18, 195-205 (2001)

  197. K. Asami, K. Takahashi and K. Shirahige.
        Progression of cell cycle monitored by dielectric spectroscopy and flow-cytometric analysis of DNA content.
        Yeast, 16, 1359-1363 (2000)

  198. Y. Tatsumi, T. Tsurimoto, K. Shirahige, H. Yoshikawa and C. Obuse.
        Association of Human Origin Recognition Complex 1 with Chromatin DNA and Nuclease-resistant Nuclear Structures
        J. Biol. Chem., 275, 5904-5910 (2000)

  199. Shirahige K , Hori Y, Shiraishi K, Yamashita M, Takahashi K, Obuse C, Tsurimoto T, Yoshikawa H.
        Regulation of DNA-replication origins during cell-cycle progression.
        Nature, 395, 618-621 (1998)

  200. M. Fujita, Y. Hori, K. Shirahige, T. Tsurimoto, H. Yoshikawa and C. Obuse.
        Cell cycle dependent topological changes of chromosomal replication origins in Saccharomyces cerevisiae.
        Genes Cells.,3, 737-749 (1998)

  201. M. Yamashita, Y. Hori, T. Shinomiya, C. Obuse, T. Tsurimoto, H. Yoshikawa, and K. Shirahige.
        The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI.
        Genes Cells.,2, 655-665 (1997)

  202. Y. Hori, K. Shirahige, C. Obuse, T. Tsurimoto and H. Yoshikawa.
        Characterization of a novel CDC gene (ORC1) partly homologous to CDC6 of Saccharomyces cerevisiae.
        Mol Biol Cell.,7, 409-418 (1996)

  203. MB. Rashid, K. Shirahige, N. Ogasawara, and H. Yoshikawa.
        Anatomy of the stimulative sequences flanking the ARS consensus sequence of chromosome VI in Saccharomyces cerevisiae.
        Gene., 150,213-220 (1994)

  204. M. Yamazoe, K. Shirahige, MB. Rashid, Y. Kaneko, T. Nakayama, N. Ogasawara and H. Yoshikawa.
        A protein which binds preferentially to single-stranded core sequence of autonomously replicating sequence is essential for respiratory function in mitochondrial of Saccharomyces cerevisiae.
        Chem., 269, 15244-15252 (1994)

  205. K. Shirahige, T. Iwasaki, MB. Rashid, N. Ogasawara and H. Yoshikawa.
        Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae.
        Mol Cell Biol., 13, 5043-5056.(1993)

  206. T. Iwasaki, K. Shirahige, H. Yoshikawa and N. Ogasawara.
        The direct cloning of the yeast genome using the gap-filling method and the complete physical mapping of Saccharomyces cerevisiae chromosome VI.
        Gene., 109, 81-87 (1991)

  207. J.C. Alonso, K. Shirahige and N. Ogasawara.
        Molecular cloning, genetic characterization and DNA sequence analysis of the recM region of Bacillus subtilis.
        Nucleic Acids Res., 18, 6771-6777 (1990)

    208. ↑Back to menu

    review (Japanese)


  1. 須谷尚史、白髭克彦　ChIP-on-chip法によりみえてきたSmc5/6複合体による染色体維持機構　蛋白質核酸酵素 Vol. 52, 25-30 (2007) 共立出版.

  2. 吉田圭介、坂東優篤、加納豊、白髭克彦　ChIP-chip法を用いた高等真核生物の染色体構造の解析　ゲノム情報と生命現象の統合的理解（榊佳之、伊藤隆司、辻省次、小原雄治編） 実験医学増刊　Vol.25, No.2, 178-184,（2007）羊土社

  3. 白髭克彦　タイリングアレイによる真核生物のゲノム構造解析　細胞工学　Vol.25, No.10, 1161-1167, (2006) 秀潤社

  4. 白髭克彦　マイクロアレイ解析の新局面　細胞工学　Vol.25, No.10, 1130-1132, (2006) 秀潤社

  5. 加藤由起、須谷尚史、白髭克彦　複製フォークによる複製と分配の連携　細胞工学 Vol.25, No.5, 492-497,（2006）　秀潤社

  6. 白髭克彦、加藤由起　複製フォークを監視するチェックポイントタンパク-染色体複製装置の危機管理?　細胞周期の最前線（中山敬一編） 実験医学増刊Vol.23, No.9, 165-172,（2005）羊土社

  7. 加藤由起、白髭克彦　ゲノム学的手法による新しい染色体研究の展開　臨床検査 Vol.49, No.5, 491-496,（2005）　医学書院

  8. 加藤由起、白髭克彦　ChIP-chip法による染色体動態の解析法　クロマチン・染色体実験プロトコール（押村光男、平岡泰編） 37-45,（2005）羊土社

  9. 白髭克彦　ゲノムタイリングチップによる染色体動態の解析　DNAチップ実験まるわかり（佐々木博己、青柳一彦編） 102-106,（2005）羊土社

  10. 加藤由起、加納豊、坂東優篤、白髭克彦　複製チェックポイント制御機構のゲノム学　日本農芸化学会誌 Vol.78, No.7, 45-47, (2004)

  11. 加藤由起、坂東優篤、加納　豊、野口英樹、白髭克彦　複製チェックポイント制御機構-ゲノム学からのアプローチ 遺伝子医学（電子媒体）No.4019, 1-6, （2004）株式会社メディカルドゥ

  12. 白髭克彦、加藤由起　TOF1とMRC1 －複製フォークの安全運航装置　実験医学　Vol.22, No.1, 47-50, (2004)　羊土社

  13. 白髭克彦　ゲノム的方法論による複製チェックポイント制御機構の解明　細胞工学 Vol.22, No.12, 1350-1351, (2003) 秀潤社

  14. 加藤由起、白髭克彦　DNAチップテクノロジー　日本農芸化学会誌 Vol.76, No.6, 548-551, (2002)

  15. 白髭克彦　出芽酵母のS/Mチェックポイント　新臨床医のための分子医学シリーズ「細胞周期の新しい展開-チェックポイント制御と癌」（野島博　編）55-68 (1999) 羊土社

  16. 白髭克彦　マイクロアレイが開く酵母研究の新時代　実験医学　17、2544-2549 (1999)　 羊土社

  17. 吉川寛、白髭克彦　Rad53による複製開始制御とS期チェック制御の連結　実験医学　17、1122-1124　(1999)　 羊土社

  18. 白髭克彦 吉川寛 酵母染色体のマルチレプリコン構造とチェックポイント制御-RAD53を中心として-実験医学　17、131-141（1999）羊土社

  19. 白髭克彦　酵母 ラボマニュアル?酵母分子細胞生物学実験法?「DNA複製」山本 正幸/大矢 禎一 共編、281-297（1998）シュプリンガー・フェアラーク東京（株）

  20. 白髭克彦、小布施力史、吉川寛　複製開始領域の構成と染色体構築-出芽酵母の場合　実験医学 16、31-40 (1998)　 羊土社

  21. 白髭克彦，堀 裕治，吉川 寛　出芽酵母のレプリコン構造　?複製開始点とイニシエータータンパク質 、細胞工学15、32-40　(1996)　秀潤社

  22. 白髭克彦、吉川寛　出芽酵母第VI染色体の複製開始機構　実験医学　11、132-137 (1993)　羊土社

review (English)


  1.   Y. Katou, K. Kaneshiro, H. Aburatani, and K. Shirahige
        Genomic Approach for the Understanding of Dynamic Aspect of Chromosome Behavior.
        Methods in Enzymology, Elsevier Life Sciences (CA), vol.409,chapter 23,389-410 in DNA Repair (edited by J.Campbell) (2006)

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